NIH Consensus Development Conference on
Management of Hepatitis C
Diagnostic Tests for Hepatitis C
David Gretch, M.D., Ph.D.
Diagnostic tests for hepatitis C (HCV) can be divided into two general categories: (l) serologic assays which detect anti-HCV antibodies, and (2) molecular assays which detect, quantify, and/or characterize HCV RNA genomes within an infected patient. Serologic assays have been subdivided into screening tests for anti-HCV and supplemental antibody tests. Molecular assays can be divided into qualitative tests for HCV RNA, quantitative tests for assessing viral RNA levels, and HCV genotype tests.
Screening Assays for Anti-HCV
The main screening assay for detecting anti-HCV antibodies is the enzyme immunoassay (EIA). The EIA has many advantages in the diagnostic setting, including ease of use, low variability, ease of automation, and relatively low expense. The first-generation anti-HCV test (EIA- I ) contained a single HCV recombinant antigen derived from the nonstructural (NS) 4 gene, designated clO0-3. (1) Although development of this test represented a dramatic breakthrough in terms of diagnosing HCV infection and reducing HCV transmission via blood transfusion, (2-5) EIA-I lacked optimal sensitivity and specificity and was subsequently replaced in 1992. (6) The EIA-2 test contains HCV antigens from the core and NS3 genes in addition to the NS4 antigen, and thus represents a multi-antigen EIA. (7) Introduction of the new antigens led to a substantial improvement in sensitivity and a slight increase in specificity relative to the EIA- I (Table 1 ) (7-15) The use of core and NS3 antigens in the EIA-2 test shortened the average "window period" for HCV seroconversion by 4-10 weeks relative to the EIA-I test.l¡ l6 A third-generation antiHCV test (ela-3), which contains reconfigured core and NS3 antigens plus an additional HCV antigen (NSS) not present in the EIA-2, (17-20) has recently been approved for screening blood products. While preliminary studies suggest an incremental improvement in sensitivity in blood donors, immunosuppressed populations, and liver clinic populations, the specificity of the EIA-3 test has not been adequately defined in the routine diagnostic setting, and utility of the NS5 antigen in this assay has been controversial.
A progressive improvement in sensitivity of detection of anti-HCV has been accomplished by the three generations of EIA screening assays (Table 1). However, testing in high-prevalence populations has indicated that not all patients with active HCV infection (e.g., HCV RNA positive) are identified with the EIA screening tests. Preliminary studies suggest the envelope 2 (E2) antigen may be a good candidate for subsequent versions of the EIA test. (21-23) Although false-positive EIA testing remains a problem in low-prevalence populations, the accuracy of the EIA-2 test is very good in high-prevalence populations, and therefore, supplemental anti-HCV tests may not be necessary in high-risk patients with a positive anti-HCV screen.
TABLE 1. Sensitivity and Accuracy of Anti-HCV Screening Tests
Low-Prevalence (Blood Donor) | | High-Prevalence (Liver Clinic) |
Test | Sensitivity | Accuracy* | | Test | Sensitivity | Accuracy* |
|
EIA-1 | 95-98% | 30-50% | | EIA-1 | 60-80% | 70-85% |
EIA-2 | 99.7-99.8% | 50-61% | | EIA-2 | 92-95% | 88-95% |
EIA-3 | 99.9+% | n.d. | | EIA-3 | 97% | n.d.
|
* Percentage of specimens with a positive anti-HCV screen which are also positive by supplemental anti-HCV test. Modified from references cited in text, and Gretch, et al., unpublished data.
Supplemental Tests for Anti-HCV
Supplemental tests for anti-HCV were developed to help resolve false-positive EIA test results. The prototype supplemental test in the United States is the FDA-licensed second-generation recombinant immunoblot assay (RIBA-2), which contains the same HCV antigens as EIA-2 in an immunoblot format. (7) Results are either positive (two or more positive antigens), indeterminate (one positive antigen), or negative. Interpretation of HCV serology depends on the patient risk status (Table 1). For example, in the low-prevalence blood bank setting, (l) about 40-50 percent of specimens with positive EIA results are false positives (i.e., RIBA-negative), and (2) few RIBA-2 indeterminate results are HCV RNA positive. (11-13,24-28) However, in the high-prevalence setting (e.g., the University of Washington Viral Hepatitis Reference Laboratory), approximately 90 percent of EIA-positive specimens are also positive by RIBA (Gretch, et al., unpublished data). In this setting, about 85 percent of RIBA-positive specimens and 20-50 percent of RIBA core or NS3 indeterminate specimens are positive for HCV RNA by PCR. (28-36) A third-generation supplemental test (RIBA-3) has been introduced in Europe, which appears to be more specific than the RIBA-2 test based on a better correlation with RNA PCR results and a reduced number of RIBA-indeterminate results, (31,37-39) as yet, RIBA-3 has not been approved in the United States.
Qualitative Tests for HCV RNA
Detection of HCV RNA in patient serum by highly sensitive tests such as reverse transcription polymerase chain reaction (RT-PCR) has become an increasingly important tool for confirming the diagnosis of hepatitis C and for assessing the antiviral response to interferon therapy. (40,41) The role of tests for HCV RNA in the diagnosis and management of hepatitis C is discussed in subsequent presentations.
Many variations in the RT-PCR assay have been described in the literature, and standardization of such "home-brew" assays has been difficult, as illustrated by a European survey, where only 16 percent of laboratories scored perfectly on a standardized test panel. (42) Numerous factors contribute to RT-PCR variability, including specimen handling and storage, correct design of amplification primers, variability of biochemical reactions, DNA product contamination, and efficiency of postamplification detection systems. (43-50) It is therefore important to emphasize the need for evidence of rigorous proficiency testing by qualified diagnostic laboratories before HCV RNA testing can be reliably used in patient management. Nonetheless, several excellent home-brew assays with proven clinical utility have been described, (48-56) of which the most sensitive can detect HCV RNA at a level of less than 100 copies per ml of patient serum. In this regard, HCV RNA proficiency testing of laboratories in the U.S. has only recently been initiated by the College of American Pathologists.
Roche Molecular Diagnostics has recently introduced the Amplicor test kit for qualitative HCV RNA detection by the RT-PCR technique. (57,58) The kit is reliable, and has built-in controls for assay sensitivity and specificity. The assay was originally designed to test 50 ul of serum, but was found to be 4-10 fold less sensitive than optimized RT-PCR assays in research reference laboratories. (57) However, modifications of the Amplicor test allow HCV RNA detection at less than 100 HCV RNA copies per ml of serum, with a specificity of 97-99 percent (Gretch, et al., unpublished data).
Quantitative Tests for HCV RNA
In addition to being a valuable research tool, the quantitative assessment of HCV RNA levels in patients before, during, and after therapy has tremendous potential for improving the clinical management of chronic hepatitis C. (59) In a recent study of HCV viremia, it was established that HCV RNA levels are relatively stable (without significant fluctuation) in untreated patients with chronic hepatitis C. (60) These findings are important because, although numerous studies have demonstrated that therapy may reduce HCV RNA levels, the assumption that HCV RNA levels are stable before therapy was unproven. The following paragraph briefly describes current methods for assessing HCV "viral load," while application of HCV RNA testing in monitoring of virologic response to therapy is discussed in subsequent sections.
Two different technologies have been developed to assess HCV RNA levels in patient specimens: target amplification methods such as quantitative PCR (Q-PCR), and signal amplification technologies such as branched DNA assay (bDNA). (61) Quantitative PCR tests have been described by several laboratories, and differ markedly in the reported performance characteristics. (61-71) The only standardized quantitative PCR assay available in kit format is the Roche Monitor assay. Unfortunately, experience with this assay has been limited. The main strength of Q-PCR is high analytical sensitivity, with reports as low as 1,000 RNA copies per ml; on the other hand, major problems include high assay variability, and limited linear range. By comparison, the bDNA test has been extensively evaluated, and appears to be highly standardized, although the sensitivity of bDNA assay is 2-3 logs less than PCR-based methods. (61,72-78) Therefore, PCR testing has been recommended on bDNA-negative specimens. (61,73) It is also important to note that a "genotype bias" is possible for all HCV molecular assays because of the extensive genetic heterogeneity of the virus. For example, the first-generation bDNA test (bDNA 1.0) apparently under-reported HCV RNA levels for a subset of HCV genotypes, (76,77) while the secondgeneration test (bDNA 2.0) appears to be more accurate. (79) Unfortunately, additional refinements may be necessary before standardized tests are licensed for routine use in hepatitis C management.
HCV Genotype Testing
HCV is a remarkably heterogeneous family of viruses, with at least six distinct genotypes and numerous subtypes of HCV identified throughout the world. (80-82) Tests to deterrnine HCV genotype fall into two categories: (I) Screening tests which detect point mutations and (2) confirrnatory tests which evaluate larger segments of HCV genes. Commonly used screening tests include 5'-RFLP analysis, coregene nested PCR, and the LIPA assay. (83-85) Confirrnatory tests include nucleotide sequencing and phylogenetic analysis of the El gene or NSSB gene. (86-88) HCV genotype deterrnination is an important aspect of ongoing clinical trials, since HCV genotype may be an independent predictor of response to therapy, as will be discussed later. However, there is as yet little role for HCV genotyping in the routine clinical setting, since optimal treatment regimens have not been defined for different HCV genotype infections.
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